Variant report

Variant	rs1351461
Chromosome Location	chr4:158726686-158726687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1351462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2166903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6536272	1.00[AMR][1000 genomes]
rs6536273	1.00[AMR][1000 genomes]
rs7662544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1025064	chr4:158719316-158898333	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158724600-158727000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:158724600-158727000	Enhancers	Fetal Intestine Large	intestine
3	chr4:158724600-158727600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:158724800-158734400	Weak transcription	Aorta	Aorta
5	chr4:158725400-158727200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr4:158725400-158727200	Enhancers	Stomach Smooth Muscle	stomach
7	chr4:158725600-158731000	Weak transcription	Fetal Intestine Small	intestine
8	chr4:158725800-158727200	Enhancers	HepG2	liver
9	chr4:158725800-158731200	Weak transcription	Liver	Liver
10	chr4:158726200-158728000	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:158726400-158726800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:158726400-158726800	Enhancers	Fetal Lung	lung
13	chr4:158726600-158727200	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links