Variant report

Variant	rs135151
Chromosome Location	chr22:33173055-33173056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1018791	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs129303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs129305	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130526	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130529	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135153	0.81[AMR][1000 genomes]
rs73156461	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33151000-33175400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:33168200-33175800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:33169200-33175400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33171600-33173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr22:33171600-33174800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr22:33171800-33174200	Enhancers	Fetal Thymus	thymus
7	chr22:33171800-33175000	Enhancers	HepG2	liver
8	chr22:33172000-33173400	Enhancers	Primary hematopoietic stem cells	blood
9	chr22:33172000-33173600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr22:33172200-33173200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr22:33172400-33173400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr22:33172600-33173200	Enhancers	HSMM	muscle
13	chr22:33172600-33173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:33172600-33175400	Weak transcription	Liver	Liver
15	chr22:33172800-33173200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr22:33173000-33174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr22:33173000-33174000	Weak transcription	Adipose Nuclei	Adipose
18	chr22:33173000-33174000	Weak transcription	Spleen	Spleen
19	chr22:33173000-33175600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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