Variant report

Variant	rs1351962
Chromosome Location	chr1:175342987-175342988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1351961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1948029	1.00[AMR][1000 genomes]
rs859419	1.00[AMR][1000 genomes]
rs859428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859435	1.00[AMR][1000 genomes]
rs859445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3408396	chr1:175341429-175345727	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:175288800-175343200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:175288800-175343200	Weak transcription	Brain Substantia Nigra	brain
4	chr1:175331400-175343200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:175332600-175343000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:175333200-175343200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:175340200-175343000	Weak transcription	Placenta	Placenta
8	chr1:175340200-175343200	Weak transcription	Fetal Brain Male	brain
9	chr1:175341800-175343200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:175341800-175343200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:175342800-175343000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:175342800-175343000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:175342800-175343000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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