Variant report

Variant	rs1352253
Chromosome Location	chr1:98647451-98647452
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11587636	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12724641	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12725029	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12731784	0.80[AMR][1000 genomes]
rs12734197	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12737713	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1473475	0.80[AMR][1000 genomes]
rs1473476	0.80[AMR][1000 genomes]
rs1487296	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1487299	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1487308	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1507061	0.80[AMR][1000 genomes]
rs17117845	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2893391	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs723702	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs994478	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010393	chr1:98643684-98698557	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98646400-98648400	Enhancers	Fetal Intestine Large	intestine
2	chr1:98646400-98648400	Enhancers	Fetal Intestine Small	intestine
3	chr1:98647200-98647600	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:98647200-98647600	Enhancers	Stomach Mucosa	stomach
5	chr1:98647200-98669000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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