Variant report
| Variant | rs1352979 |
|---|---|
| Chromosome Location | chr9:105632182-105632183 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10114553 | 0.81[EUR][1000 genomes] |
| rs10117253 | 0.84[EUR][1000 genomes] |
| rs10121844 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[TSI][hapmap] |
| rs10512307 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10739854 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10739855 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10760921 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10760922 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10760924 | 0.96[EUR][1000 genomes] |
| rs10820294 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10820318 | 0.83[EUR][1000 genomes] |
| rs10990364 | 0.84[EUR][1000 genomes] |
| rs10990381 | 0.89[EUR][1000 genomes] |
| rs12553883 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1418778 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2067711 | 0.81[EUR][1000 genomes] |
| rs28372411 | 0.82[EUR][1000 genomes] |
| rs7030091 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7037875 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs7049087 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7872777 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7875851 | 0.93[EUR][1000 genomes] |
| rs873091 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047080 | chr9:105432479-105658235 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv540185 | chr9:105432479-105658235 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1054263 | chr9:105570212-105754741 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv430086 | chr9:105585487-105632182 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1054932 | chr9:105585667-105646429 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1053435 | chr9:105594399-105733795 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv6647 | chr9:105612342-105657876 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv893656 | chr9:105625399-105853222 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1352979 | ANP32B | cis | cerebellum | SCAN |
| rs1352979 | INVS | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:105630200-105635200 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr9:105630400-105637600 | Weak transcription | Fetal Heart | heart |
