Variant report

Variant	rs1355109
Chromosome Location	chr4:127325506-127325507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10857113	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098866	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11939675	0.90[ASN][1000 genomes]
rs13106216	0.90[ASN][1000 genomes]
rs17011076	0.90[ASN][1000 genomes]
rs17011079	0.88[ASN][1000 genomes]
rs1858092	0.88[ASN][1000 genomes]
rs2391051	0.90[ASN][1000 genomes]
rs2391052	0.90[ASN][1000 genomes]
rs2391053	0.90[ASN][1000 genomes]
rs2391054	0.90[ASN][1000 genomes]
rs2391055	0.88[ASN][1000 genomes]
rs2391056	0.88[ASN][1000 genomes]
rs28419042	0.90[ASN][1000 genomes]
rs28765400	0.90[ASN][1000 genomes]
rs2893184	0.90[ASN][1000 genomes]
rs34210608	0.87[ASN][1000 genomes]
rs7697549	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830054	chr4:127155575-127331549	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv524303	chr4:127319902-127329737	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1355109	APOA1BP	trans	cerebellum	SCAN
rs1355109	MFSD8	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127325400-127326400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:127325400-127326600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:127325400-127326600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:127325400-127326600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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