Variant report

Variant	rs1355442
Chromosome Location	chr14:84293354-84293355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1355440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36087229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899836	1.00[ASN][1000 genomes]
rs72693448	1.00[ASN][1000 genomes]
rs72693449	1.00[ASN][1000 genomes]
rs72693453	1.00[ASN][1000 genomes]
rs72693464	1.00[ASN][1000 genomes]
rs72693468	1.00[ASN][1000 genomes]
rs72693470	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758365	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760003	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832844	chr14:84136460-84293827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84292600-84294400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:84292800-84293400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:84292800-84293400	Active TSS	NHDF-Ad	bronchial
4	chr14:84292800-84293600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:84292800-84293600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:84292800-84293600	Active TSS	Muscle Satellite Cultured Cells	--
7	chr14:84292800-84294400	Enhancers	Fetal Muscle Leg	muscle
8	chr14:84292800-84294600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:84293000-84293600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:84293000-84293600	Active TSS	Right Atrium	heart
11	chr14:84293200-84293600	Active TSS	Adipose Nuclei	Adipose
12	chr14:84293200-84293600	Active TSS	Psoas Muscle	Psoas
13	chr14:84293200-84293600	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr14:84293200-84294400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr14:84293200-84294400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:84293200-84294400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:84293200-84295000	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links