Variant report

Variant	rs1355637
Chromosome Location	chr1:150582438-150582439
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
2	chr1:150581828..150584302-chr1:150897421..150900284,2	MCF-7	breast:
3	chr1:150575837..150580445-chr1:150580466..150584080,8	K562	blood:
4	chr1:150575837..150579446-chr1:150579554..150584365,8	K562	blood:

Variant related genes	Relation type
ENSG00000264508	Chromatin interaction
ENSG00000264584	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000143379	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11587575	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1355637	THEM5	cis	cerebellum	SCAN
rs1355637	LINGO4	cis	cerebellum	SCAN
rs1355637	LIX1L	cis	cerebellum	SCAN
rs1355637	GABPB2	cis	cerebellum	SCAN
rs1355637	POLR3GL	cis	cerebellum	SCAN
rs1355637	MCL1	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553000-150583200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:150553200-150583200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
4	chr1:150554000-150583200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:150555400-150582600	Weak transcription	Primary B cells from cord blood	blood
6	chr1:150562200-150583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:150563000-150583800	Weak transcription	Fetal Lung	lung
8	chr1:150564400-150583800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:150566400-150583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:150568000-150583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:150571000-150583800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:150573200-150583000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr1:150573400-150583000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:150573400-150583200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:150573400-150583400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:150573400-150583600	Weak transcription	Colonic Mucosa	Colon
17	chr1:150573400-150584200	Weak transcription	Thymus	Thymus
18	chr1:150573400-150587800	Weak transcription	Brain Germinal Matrix	brain
19	chr1:150573600-150583800	Weak transcription	Fetal Brain Female	brain
20	chr1:150573600-150583800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:150575400-150583400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:150576200-150591000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:150577000-150588400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:150577400-150585800	Weak transcription	Aorta	Aorta
25	chr1:150577400-150587800	Weak transcription	Esophagus	oesophagus
26	chr1:150577600-150583200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:150577600-150583400	Weak transcription	Stomach Mucosa	stomach
28	chr1:150577600-150584000	Weak transcription	Right Ventricle	heart
29	chr1:150577600-150584600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:150577800-150583200	Weak transcription	Pancreas	Pancrea
31	chr1:150577800-150583600	Weak transcription	Lung	lung
32	chr1:150577800-150583800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:150578000-150583000	Weak transcription	Placenta	Placenta
34	chr1:150578000-150583200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:150578000-150583200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:150578000-150583200	Weak transcription	Fetal Intestine Large	intestine
37	chr1:150578000-150583200	Weak transcription	NHLF	lung
38	chr1:150578000-150583400	Weak transcription	HUVEC	blood vessel
39	chr1:150578000-150583600	Weak transcription	Osteobl	bone
40	chr1:150578000-150592600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:150579400-150583200	Strong transcription	Fetal Intestine Small	intestine
42	chr1:150579400-150583800	Weak transcription	K562	blood
43	chr1:150579600-150583200	Weak transcription	Small Intestine	intestine
44	chr1:150581600-150582600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:150581600-150582600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:150581600-150582600	Enhancers	Right Atrium	heart
47	chr1:150581600-150582800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:150581600-150582800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:150581600-150583000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr1:150581600-150584800	Enhancers	Brain Inferior Temporal Lobe	brain

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