Variant report
| Variant | rs1356142 |
|---|---|
| Chromosome Location | chr3:161377115-161377116 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161347807..161349997-chr3:161376409..161377941,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12493665 | 0.84[ASN][1000 genomes] |
| rs12629040 | 0.98[ASN][1000 genomes] |
| rs12630808 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs1568022 | 0.99[ASN][1000 genomes] |
| rs16833034 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16833083 | 0.90[ASN][1000 genomes] |
| rs16847278 | 0.93[ASN][1000 genomes] |
| rs2138319 | 0.96[ASN][1000 genomes] |
| rs35055079 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59226458 | 0.98[ASN][1000 genomes] |
| rs62281363 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6780489 | 0.88[ASN][1000 genomes] |
| rs9863808 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004255 | chr3:161340249-161476537 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161375400-161378400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
