Variant report

Variant	rs1356857
Chromosome Location	chr15:54921962-54921963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10220855	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11632253	0.88[CEU][hapmap]
rs11632366	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11852668	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11852743	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12592900	0.92[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12592914	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs12708436	0.84[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs1520411	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1818711	0.88[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1850994	0.84[CEU][hapmap]
rs1851000	0.88[CEU][hapmap];0.85[TSI][hapmap]
rs1851005	0.87[CEU][hapmap]
rs1851010	0.84[CEU][hapmap]
rs1972137	0.84[CEU][hapmap];0.87[TSI][hapmap]
rs2414331	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2414332	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2460605	0.88[CEU][hapmap]
rs2460606	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs2460608	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553220	0.83[CEU][hapmap]
rs2553221	0.87[CEU][hapmap]
rs2553225	0.87[CEU][hapmap]
rs2681964	0.82[EUR][1000 genomes]
rs2681965	0.84[EUR][1000 genomes]
rs2681966	0.84[EUR][1000 genomes]
rs2911847	0.88[CEU][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs2947001	0.88[CEU][hapmap]
rs2947003	0.87[EUR][1000 genomes]
rs3848141	0.92[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3959676	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493694	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493695	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9284299	0.88[CEU][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904237	chr15:54888537-54927484	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv569509	chr15:54888537-54932716	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv569518	chr15:54898631-54954864	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1043600	chr15:54910593-55010156	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
7	nsv1043237	chr15:54916301-55034633	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
8	nsv904238	chr15:54919539-54998764	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
9	nsv1053983	chr15:54920850-54999183	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1356857	MYO5C	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54921400-54923000	Weak transcription	Fetal Lung	lung
2	chr15:54921400-54925400	Weak transcription	Aorta	Aorta

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