Variant report

Variant	rs1357683
Chromosome Location	chr7:109204464-109204465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1357684	0.96[EUR][1000 genomes]
rs1916912	0.94[EUR][1000 genomes]
rs73427002	0.99[EUR][1000 genomes]
rs73428903	0.99[EUR][1000 genomes]
rs73428913	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109188000-109211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:109198200-109211200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:109198600-109211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:109199600-109207400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:109200200-109210600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:109200200-109211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:109204400-109205000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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