Variant report

Variant	rs1357722
Chromosome Location	chr2:191027133-191027134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10169078	1.00[ASN][1000 genomes]
rs10804032	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687388	0.99[EUR][1000 genomes]
rs11693404	0.81[EUR][1000 genomes]
rs12617421	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990297	0.86[EUR][1000 genomes]
rs13411862	1.00[ASN][1000 genomes]
rs55680126	1.00[ASN][1000 genomes]
rs55867429	1.00[ASN][1000 genomes]
rs58093950	1.00[ASN][1000 genomes]
rs73978912	1.00[ASN][1000 genomes]
rs73978915	1.00[ASN][1000 genomes]
rs73978917	1.00[ASN][1000 genomes]
rs73978921	1.00[ASN][1000 genomes]
rs73978923	1.00[ASN][1000 genomes]
rs73978929	1.00[ASN][1000 genomes]
rs73978930	1.00[ASN][1000 genomes]
rs73978935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv526659	chr2:191023961-191027133	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191024400-191042200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:191025400-191030000	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:191025800-191027200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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