Variant report

Variant	rs1358309
Chromosome Location	chr4:28141525-28141526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11736141	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12504075	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130395	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6835345	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6850713	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71596137	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71596138	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008691	chr4:28051516-28193042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005346	chr4:28120195-28161929	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv998352	chr4:28120195-28162959	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012692	chr4:28122071-28165368	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28141200-28141600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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