Variant report

Variant	rs1358312
Chromosome Location	chr4:101971451-101971452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2037773	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28488364	0.82[ASN][1000 genomes]
rs34422081	0.82[ASN][1000 genomes]
rs41498549	0.82[ASN][1000 genomes]
rs55792312	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58457068	0.89[AMR][1000 genomes]
rs58656951	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62305883	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62305884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62305885	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62305886	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62305887	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6851231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72929311	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs952506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
6	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
7	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
8	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
13	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:101958400-101981200	Weak transcription	Aorta	Aorta
15	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:101959400-101981400	Weak transcription	HMEC	breast
17	chr4:101959600-101984400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:101960800-101995000	Weak transcription	HSMM	muscle
22	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:101961000-101980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:101961000-101982600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:101961000-102024600	Weak transcription	NHEK	skin
28	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
29	chr4:101961400-101981000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr4:101962000-101978400	Weak transcription	Osteobl	bone
32	chr4:101962200-101981400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:101962200-102000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:101964000-101973000	Weak transcription	Brain Germinal Matrix	brain
35	chr4:101964200-101987800	Weak transcription	HSMMtube	muscle
36	chr4:101966400-101971800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:101966400-101971800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:101966600-101975800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:101966600-101980800	Weak transcription	Adipose Nuclei	Adipose
40	chr4:101966600-101981000	Weak transcription	Dnd41	blood
41	chr4:101966600-102003000	Weak transcription	Primary T cells from cord blood	blood
42	chr4:101966600-102007800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:101966800-101978400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr4:101966800-101978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:101966800-101982200	Weak transcription	NH-A	brain
46	chr4:101966800-101992200	Weak transcription	Ovary	ovary
47	chr4:101966800-102007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:101967000-101978000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:101967000-101978400	Weak transcription	Liver	Liver
50	chr4:101967200-101978600	Weak transcription	Primary B cells from peripheral blood	blood

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