Variant report

Variant	rs1358688
Chromosome Location	chr7:21993509-21993510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1406704	0.80[AFR][1000 genomes]
rs1534769	0.92[AFR][1000 genomes]
rs6461624	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21989000-21993600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:21989200-21994400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:21989400-21999200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:21989600-21994600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:21992800-21995000	Enhancers	Fetal Heart	heart
6	chr7:21993000-21994000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:21993000-21994400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:21993200-21993600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr7:21993200-21993600	Enhancers	Ovary	ovary
10	chr7:21993200-21993800	Enhancers	Fetal Stomach	stomach
11	chr7:21993200-21994600	Enhancers	Colon Smooth Muscle	Colon
12	chr7:21993200-21994600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:21993400-21993800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:21993400-21993800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:21993400-21994600	Enhancers	Fetal Lung	lung
16	chr7:21993400-21994600	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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