Variant report

Variant	rs1359215
Chromosome Location	chr13:37877935-37877936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1324024	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1324038	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1359214	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1924452	0.82[ASN][1000 genomes]
rs1998565	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61947173	0.86[EUR][1000 genomes]
rs6563522	0.82[ASN][1000 genomes]
rs6563526	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7985720	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9532027	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv471128	chr13:37838294-37880725	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37877000-37879800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:37877200-37878000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:37877400-37878000	Enhancers	Osteobl	bone
4	chr13:37877600-37878000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:37877600-37878000	Enhancers	NHDF-Ad	bronchial
6	chr13:37877600-37878600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:37877600-37878600	Enhancers	NHEK	skin
8	chr13:37877800-37878000	Enhancers	HMEC	breast
9	chr13:37877800-37878400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr13:37877800-37878400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:37877800-37880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:37877800-37880200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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