Variant report

Variant	rs1360856
Chromosome Location	chr13:29751531-29751532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12429003	0.81[ASN][1000 genomes]
rs1335653	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1335654	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1335663	0.89[ASN][1000 genomes]
rs1360857	0.89[ASN][1000 genomes]
rs1360858	0.86[ASN][1000 genomes]
rs1577475	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1577476	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1577478	0.89[ASN][1000 genomes]
rs1999717	0.89[ASN][1000 genomes]
rs2050463	0.89[ASN][1000 genomes]
rs4098154	0.89[ASN][1000 genomes]
rs4146404	0.89[ASN][1000 genomes]
rs4146405	0.89[ASN][1000 genomes]
rs4369507	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4444183	0.87[ASN][1000 genomes]
rs4512949	0.89[ASN][1000 genomes]
rs4769005	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4769006	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4769008	0.89[ASN][1000 genomes]
rs4769688	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769689	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769698	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4769699	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4769702	0.89[ASN][1000 genomes]
rs4769703	0.89[ASN][1000 genomes]
rs4769704	0.89[ASN][1000 genomes]
rs6490365	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6490370	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6490376	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6490377	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6490379	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6490380	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7325901	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328586	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7981178	0.89[ASN][1000 genomes]
rs7981243	0.89[ASN][1000 genomes]
rs7981300	0.89[ASN][1000 genomes]
rs7982062	0.89[ASN][1000 genomes]
rs7982077	0.89[ASN][1000 genomes]
rs7984562	0.89[ASN][1000 genomes]
rs7985145	0.89[ASN][1000 genomes]
rs7985337	0.84[ASN][1000 genomes]
rs7996682	0.87[ASN][1000 genomes]
rs7998019	0.89[ASN][1000 genomes]
rs7999446	0.89[ASN][1000 genomes]
rs7999907	0.89[ASN][1000 genomes]
rs8001430	0.89[ASN][1000 genomes]
rs9314942	0.89[ASN][1000 genomes]
rs9314943	0.89[ASN][1000 genomes]
rs9314944	0.89[ASN][1000 genomes]
rs9506123	0.89[ASN][1000 genomes]
rs9508321	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9550453	0.89[ASN][1000 genomes]
rs9550454	0.89[ASN][1000 genomes]
rs9550455	0.89[ASN][1000 genomes]
rs9579306	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9579308	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3495579	chr13:29750102-29752700	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3404529	chr13:29750690-29751818	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3495581	chr13:29750721-29751640	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3503034	chr13:29750732-29751724	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3503035	chr13:29750739-29751771	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3508319	chr13:29750744-29751758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3508308	chr13:29750755-29751707	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3508297	chr13:29750760-29751715	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3503033	chr13:29750760-29751732	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3503032	chr13:29750772-29751731	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3508330	chr13:29750817-29751686	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3503031	chr13:29750827-29751686	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3503036	chr13:29750831-29751684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3508341	chr13:29750831-29751684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv20967	chr13:29750941-29751706	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv2085858	chr13:29751529-29751532	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29734400-29752600	Weak transcription	Aorta	Aorta
2	chr13:29745600-29752400	Weak transcription	Fetal Heart	heart

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