Variant report

Variant	rs1361403
Chromosome Location	chr1:196512782-196512783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1887972	0.85[AFR][1000 genomes]
rs4342801	1.00[AFR][1000 genomes]
rs4348670	1.00[AFR][1000 genomes]
rs4491018	0.93[AFR][1000 genomes]
rs4658036	0.93[AFR][1000 genomes]
rs485155	0.85[AFR][1000 genomes]
rs510251	0.93[AFR][1000 genomes]
rs567284	0.85[AFR][1000 genomes]
rs569219	0.85[AFR][1000 genomes]
rs6695487	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196509800-196515400	Weak transcription	Liver	Liver
2	chr1:196509800-196529600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:196512400-196514400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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