Variant report

Variant	rs1361868
Chromosome Location	chr1:95100877-95100878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95100479..95101193-chr1:95267507..95268149,2	MCF-7	breast:
2	chr1:95098692..95101011-chr1:95110470..95114437,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12132926	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12738550	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17403082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17411572	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3814015	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4847321	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847322	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923008	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66472521	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694645	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729586	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729587	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1910	chr1:95100383-95111872	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95090000-95102800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:95095800-95101400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:95095800-95102200	Weak transcription	Fetal Intestine Small	intestine
4	chr1:95095800-95108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:95098600-95101000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:95099000-95101400	Enhancers	Pancreas	Pancrea
7	chr1:95099000-95102000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:95099400-95102000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:95099400-95102800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:95099400-95102800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:95099600-95102200	Weak transcription	Ovary	ovary
12	chr1:95099600-95102800	Weak transcription	NHDF-Ad	bronchial
13	chr1:95099800-95111600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:95100000-95101800	Enhancers	K562	blood
15	chr1:95100000-95103200	Enhancers	NHEK	skin
16	chr1:95100200-95103000	Enhancers	HMEC	breast
17	chr1:95100400-95101000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:95100400-95101600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:95100400-95101800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:95100400-95102000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:95100400-95102800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:95100400-95102800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:95100400-95103000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:95100400-95103200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr1:95100400-95103200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:95100400-95103400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:95100600-95101000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:95100600-95101400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr1:95100600-95101400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:95100600-95101400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:95100600-95101400	Enhancers	Placenta	Placenta
32	chr1:95100600-95101800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:95100600-95102200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:95100600-95103000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:95100600-95103200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr1:95100600-95103200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr1:95100600-95103200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr1:95100800-95101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:95100800-95101800	Weak transcription	Stomach Mucosa	stomach
40	chr1:95100800-95101800	Weak transcription	NHLF	lung
41	chr1:95100800-95110600	Weak transcription	NH-A	brain
42	chr1:95100800-95112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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