Variant report

Variant	rs1362158
Chromosome Location	chr7:22254828-22254829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STEAP1B-6	chr7:22254674-22255027	NONHSAT119455

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17712784	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs1833108	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
4	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:22243400-22255800	Weak transcription	Liver	Liver
7	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
8	chr7:22243600-22256600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:22243600-22258400	Weak transcription	Fetal Intestine Small	intestine
10	chr7:22244200-22258000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:22244200-22258400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:22244200-22258600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:22244600-22258000	Weak transcription	Primary B cells from cord blood	blood
14	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:22244800-22256800	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:22247600-22256400	Enhancers	Brain Cingulate Gyrus	brain
17	chr7:22247800-22256400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:22247800-22258000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:22248200-22255400	Weak transcription	Right Ventricle	heart
20	chr7:22248800-22255800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:22249400-22255200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr7:22249400-22255800	Weak transcription	Psoas Muscle	Psoas
23	chr7:22249600-22256000	Enhancers	Brain Substantia Nigra	brain
24	chr7:22249800-22256000	Strong transcription	HepG2	liver
25	chr7:22250000-22256800	Enhancers	Brain Angular Gyrus	brain
26	chr7:22250400-22257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:22250400-22258800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:22250800-22259400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:22250800-22261800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:22251000-22258800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:22251400-22258600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:22251600-22256000	Enhancers	Brain Hippocampus Middle	brain
33	chr7:22252000-22255800	Weak transcription	Pancreas	Pancrea
34	chr7:22252200-22255800	Weak transcription	Lung	lung
35	chr7:22252400-22264000	Weak transcription	Spleen	Spleen
36	chr7:22253000-22256200	Genic enhancers	Dnd41	blood
37	chr7:22253000-22256800	Weak transcription	Fetal Kidney	kidney
38	chr7:22253800-22255000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:22253800-22255400	Enhancers	Aorta	Aorta
40	chr7:22253800-22260200	Active TSS	Adipose Nuclei	Adipose
41	chr7:22254000-22256000	Enhancers	Brain Anterior Caudate	brain
42	chr7:22254000-22257000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:22254000-22258600	Weak transcription	Esophagus	oesophagus
44	chr7:22254000-22259000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:22254200-22255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:22254200-22256200	Enhancers	HUVEC	blood vessel
48	chr7:22254400-22258400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:22254600-22255600	Weak transcription	Left Ventricle	heart
50	chr7:22254600-22259200	Strong transcription	Fetal Thymus	thymus

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