Variant report

Variant	rs1363470
Chromosome Location	chr5:128005337-128005338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10040226	0.85[ASN][1000 genomes]
rs10045094	0.91[ASN][1000 genomes]
rs10060222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066569	0.85[ASN][1000 genomes]
rs10066620	0.85[ASN][1000 genomes]
rs10073671	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10477686	0.84[ASN][1000 genomes]
rs10478816	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12521101	0.85[ASN][1000 genomes]
rs13185878	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13361872	0.91[ASN][1000 genomes]
rs1363467	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422459	0.91[ASN][1000 genomes]
rs35638608	0.84[ASN][1000 genomes]
rs3935200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3935201	0.84[ASN][1000 genomes]
rs4240408	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4277962	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4351202	0.83[ASN][1000 genomes]
rs4362987	0.85[ASN][1000 genomes]
rs4370320	0.86[ASN][1000 genomes]
rs4415123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4482943	0.83[ASN][1000 genomes]
rs4579300	0.85[ASN][1000 genomes]
rs4836381	0.92[EUR][1000 genomes]
rs4836384	0.84[ASN][1000 genomes]
rs4836385	0.84[ASN][1000 genomes]
rs55700282	0.84[ASN][1000 genomes]
rs55877902	0.84[ASN][1000 genomes]
rs56413030	0.84[ASN][1000 genomes]
rs60454446	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6595843	0.92[EUR][1000 genomes]
rs6595849	0.84[ASN][1000 genomes]
rs6859278	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6870419	0.83[ASN][1000 genomes]
rs6876464	0.83[ASN][1000 genomes]
rs6878310	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6895717	0.85[ASN][1000 genomes]
rs6897611	0.85[ASN][1000 genomes]
rs6897794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73350645	0.85[ASN][1000 genomes]
rs7715195	0.81[ASN][1000 genomes]
rs7715781	0.83[ASN][1000 genomes]
rs9327479	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1363470	FBN2	cis	lung	GTEx
rs1363470	FBN2	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128002200-128007400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:128005000-128007600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:128005200-128006400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links