Variant report

Variant	rs1363499
Chromosome Location	chr5:152605860-152605861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1381540	0.92[ASN][1000 genomes]
rs1381541	0.86[ASN][1000 genomes]
rs172452	0.96[EUR][1000 genomes]
rs2615160	0.96[EUR][1000 genomes]
rs2615161	0.96[EUR][1000 genomes]
rs2615162	0.96[EUR][1000 genomes]
rs2615163	0.96[EUR][1000 genomes]
rs2910030	0.85[EUR][1000 genomes]
rs2926287	0.92[ASN][1000 genomes]
rs2926288	0.94[ASN][1000 genomes]
rs2926290	0.85[ASN][1000 genomes]
rs2927172	0.92[ASN][1000 genomes]
rs294699	0.85[EUR][1000 genomes]
rs294708	0.85[EUR][1000 genomes]
rs296188	0.96[EUR][1000 genomes]
rs2962810	0.85[EUR][1000 genomes]
rs2962816	0.85[EUR][1000 genomes]
rs2962819	0.89[EUR][1000 genomes]
rs2962826	0.85[EUR][1000 genomes]
rs2964817	0.90[ASN][1000 genomes]
rs2973146	0.85[EUR][1000 genomes]
rs2973149	0.92[ASN][1000 genomes]
rs2973150	0.82[ASN][1000 genomes]
rs982494	0.92[ASN][1000 genomes]
rs992714	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1019051	chr5:152550863-153057896	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868912	chr5:152582002-153095306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links