Variant report

Variant	rs1364886
Chromosome Location	chr4:141825374-141825375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1863300	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2059496	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2059498	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1364886	RAB33B	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141789600-141831600	Weak transcription	Aorta	Aorta
2	chr4:141808200-141826200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:141816200-141851400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:141816400-141831600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:141817800-141831800	Weak transcription	Pancreas	Pancrea
6	chr4:141822800-141826800	Enhancers	Fetal Brain Male	brain
7	chr4:141823000-141827000	Enhancers	Fetal Lung	lung
8	chr4:141823200-141825400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:141823200-141827200	Enhancers	Fetal Muscle Leg	muscle
10	chr4:141823200-141829000	Enhancers	Fetal Stomach	stomach
11	chr4:141823200-141855800	Weak transcription	Osteobl	bone
12	chr4:141823600-141831600	Weak transcription	Fetal Brain Female	brain
13	chr4:141823800-141825400	Enhancers	Fetal Muscle Trunk	muscle
14	chr4:141823800-141825400	Enhancers	Left Ventricle	heart
15	chr4:141824000-141825400	Enhancers	Ovary	ovary
16	chr4:141824000-141825400	Enhancers	Right Ventricle	heart
17	chr4:141824000-141825400	Enhancers	Spleen	Spleen
18	chr4:141824000-141826400	Enhancers	Adipose Nuclei	Adipose
19	chr4:141824000-141827200	Enhancers	Fetal Heart	heart
20	chr4:141824200-141825800	Enhancers	Fetal Kidney	kidney
21	chr4:141824200-141826400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:141824200-141827800	Weak transcription	Psoas Muscle	Psoas
23	chr4:141824400-141825400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:141824600-141825400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:141824600-141825400	Enhancers	NHDF-Ad	bronchial
26	chr4:141824600-141825600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:141824600-141826800	Enhancers	Colon Smooth Muscle	Colon
28	chr4:141824800-141827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:141825000-141825800	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:141825000-141826000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:141825200-141825400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:141825200-141825400	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr4:141825200-141825600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:141825200-141826000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr4:141825200-141831800	Weak transcription	Fetal Intestine Small	intestine

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