Variant report

Variant	rs1365089
Chromosome Location	chr8:54117535-54117536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10099942	0.89[CEU][hapmap]
rs16918853	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs16918884	0.89[CEU][hapmap]
rs17356028	0.85[EUR][1000 genomes]
rs3802279	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs7817710	0.89[CEU][hapmap]
rs7824175	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54116200-54119000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:54116200-54119400	Enhancers	Thymus	Thymus
3	chr8:54116600-54118000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:54116600-54119000	Enhancers	Primary T cells from cord blood	blood
5	chr8:54116600-54119000	Enhancers	Fetal Muscle Leg	muscle
6	chr8:54116600-54119000	Enhancers	Fetal Thymus	thymus
7	chr8:54116800-54118800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:54116800-54119400	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:54117000-54117600	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:54117200-54118400	Weak transcription	Brain Germinal Matrix	brain
11	chr8:54117400-54117600	Flanking Active TSS	Dnd41	blood
12	chr8:54117400-54118200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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