Variant report

Variant	rs1365581
Chromosome Location	chr4:20686997-20686998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20420524..20421239-chr4:20686532..20687103,2	K562	blood:
2	chr4:20424367..20425209-chr4:20686856..20687583,2	MCF-7	breast:
3	chr4:20423749..20424719-chr4:20686427..20687473,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10516361	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1080125	0.92[ASN][1000 genomes]
rs10805218	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11721944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs11723855	0.85[ASN][1000 genomes]
rs11733451	0.92[ASN][1000 genomes]
rs11735866	0.90[ASN][1000 genomes]
rs11736309	0.92[ASN][1000 genomes]
rs11736477	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs11737893	0.96[ASN][1000 genomes]
rs12498799	0.92[ASN][1000 genomes]
rs12503714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[ASN][1000 genomes]
rs12509329	0.86[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs12510666	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1365580	1.00[ASN][1000 genomes]
rs1426882	0.94[ASN][1000 genomes]
rs16869823	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16869859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17552950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17622121	0.96[ASN][1000 genomes]
rs2291530	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs28439580	0.96[ASN][1000 genomes]
rs2874831	0.96[ASN][1000 genomes]
rs56267013	0.96[ASN][1000 genomes]
rs57364495	0.96[ASN][1000 genomes]
rs59020971	0.85[ASN][1000 genomes]
rs59687189	0.80[ASN][1000 genomes]
rs61790721	0.90[ASN][1000 genomes]
rs61790747	0.90[ASN][1000 genomes]
rs62410066	0.96[ASN][1000 genomes]
rs62410087	0.96[ASN][1000 genomes]
rs62410132	0.96[ASN][1000 genomes]
rs62410133	0.96[ASN][1000 genomes]
rs62410158	0.89[ASN][1000 genomes]
rs62411661	0.89[ASN][1000 genomes]
rs6831523	0.89[ASN][1000 genomes]
rs73101456	0.96[ASN][1000 genomes]
rs964020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20684200-20687400	Enhancers	Fetal Lung	lung

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