Variant report

Variant	rs1365863
Chromosome Location	chr2:49509678-49509679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10189252	0.87[EUR][1000 genomes]
rs11674727	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11678084	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11687169	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12615060	0.84[EUR][1000 genomes]
rs12617184	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12621511	0.84[EUR][1000 genomes]
rs12987821	0.81[EUR][1000 genomes]
rs12992153	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12994278	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12994729	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12997347	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12999467	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13000772	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13006053	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13006072	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13009122	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13015519	0.86[EUR][1000 genomes]
rs13016541	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13020477	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13020652	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13032160	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13033709	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1469359	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1469360	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1834783	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2162527	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2195089	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2195090	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2350021	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2350022	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2882305	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4971573	0.81[EUR][1000 genomes]
rs4971742	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4971751	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4971753	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4995782	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4995783	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6708953	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008909	chr2:49281630-49571619	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv993555	chr2:49299168-49781707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869321	chr2:49316909-49587401	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005336	chr2:49422587-49737964	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv535686	chr2:49422587-49737964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1006675	chr2:49422587-49737965	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv535687	chr2:49422587-49737965	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv998367	chr2:49441886-49795482	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1002948	chr2:49447212-49522898	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv508141	chr2:49490768-49545631	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv581796	chr2:49498006-49522163	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv874013	chr2:49498006-49690836	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1003189	chr2:49500895-49517511	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:49509600-49510600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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