Variant report

Variant	rs1366326
Chromosome Location	chr6:39113224-39113225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947782	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11755423	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11756949	0.88[ASN][1000 genomes]
rs11965189	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58253054	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6914346	0.88[ASN][1000 genomes]
rs6921946	0.88[ASN][1000 genomes]
rs6934302	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs72861336	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757873	0.82[ASW][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs9394575	0.86[LWK][hapmap]
rs9470983	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1366326	PRPH2	cis	parietal	SCAN
rs1366326	C6orf108	cis	parietal	SCAN
rs1366326	ZFAND3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39109600-39113800	Enhancers	Adipose Nuclei	Adipose
2	chr6:39110800-39114400	Enhancers	Fetal Lung	lung
3	chr6:39113000-39118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:39113000-39121600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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