Variant report

Variant	rs1366689
Chromosome Location	chr4:148256735-148256736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13150072	0.81[ASN][1000 genomes]
rs2714888	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv4540	chr4:148230593-148275778	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148246200-148263400	Weak transcription	Right Atrium	heart
2	chr4:148248800-148260200	Weak transcription	NHLF	lung
3	chr4:148255000-148260200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:148255200-148257800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:148255400-148258200	Enhancers	HUVEC	blood vessel
6	chr4:148255800-148257600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:148256000-148257000	Weak transcription	NH-A	brain
8	chr4:148256000-148257400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:148256000-148261400	Weak transcription	Fetal Stomach	stomach
10	chr4:148256200-148257000	Weak transcription	HSMM	muscle
11	chr4:148256200-148261200	Weak transcription	NHDF-Ad	bronchial
12	chr4:148256400-148259600	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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