Variant report

Variant	rs1366814
Chromosome Location	chr2:31628705-31628706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10175754	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10199855	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11888215	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892663	1.00[ASN][1000 genomes]
rs11893761	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898845	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418515	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13431382	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1346644	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs17011422	1.00[ASN][1000 genomes]
rs17011431	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206798	0.85[CEU][hapmap]
rs206802	0.85[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes]
rs206803	0.85[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs494852	0.85[CEU][hapmap]
rs62141163	1.00[ASN][1000 genomes]
rs62141164	1.00[ASN][1000 genomes]
rs62141165	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62141166	1.00[ASN][1000 genomes]
rs62141174	1.00[ASN][1000 genomes]
rs62141225	1.00[ASN][1000 genomes]
rs62142956	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142957	1.00[ASN][1000 genomes]
rs62142958	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62144961	1.00[ASN][1000 genomes]
rs62144962	1.00[ASN][1000 genomes]
rs62144963	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62144964	1.00[ASN][1000 genomes]
rs62144965	1.00[ASN][1000 genomes]
rs6713694	1.00[ASN][1000 genomes]
rs6738435	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759319	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72790669	1.00[ASN][1000 genomes]
rs72790675	1.00[ASN][1000 genomes]
rs72794605	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv456030	chr2:31598823-31820256	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv456041	chr2:31598823-31820256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv581269	chr2:31598823-31820256	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv998853	chr2:31601455-31858961	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1005565	chr2:31603134-31868877	Genic enhancers Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1007179	chr2:31616112-31835410	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1005032	chr2:31616112-31867450	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31548000-31634600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31565200-31633000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:31574600-31636600	Weak transcription	Colonic Mucosa	Colon
4	chr2:31598400-31639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:31599600-31636600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:31626200-31630200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:31626200-31634800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:31626400-31633600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:31626400-31634600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:31626800-31628800	Strong transcription	HMEC	breast
11	chr2:31627000-31628800	Genic enhancers	Fetal Intestine Large	intestine
12	chr2:31627000-31629600	Genic enhancers	Fetal Intestine Small	intestine
13	chr2:31627400-31629600	Strong transcription	NHEK	skin
14	chr2:31627400-31634600	Weak transcription	NHDF-Ad	bronchial
15	chr2:31627800-31629400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:31627800-31629400	Enhancers	Liver	Liver
17	chr2:31628000-31628800	Enhancers	A549	lung
18	chr2:31628000-31628800	Weak transcription	NHLF	lung
19	chr2:31628000-31634600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:31628400-31630400	Enhancers	Duodenum Mucosa	Duodenum

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