Variant report

Variant	rs1367712
Chromosome Location	chr21:29073070-29073071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:28221411..28222029-chr21:29073057..29074050,3	K562	blood:
2	chr21:28222266..28223005-chr21:29072932..29073598,4	MCF-7	breast:
3	chr21:28104973..28105545-chr21:29073049..29073643,2	MCF-7	breast:
4	chr21:28221528..28223154-chr21:29072525..29074611,26	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10211869	0.80[ASN][1000 genomes]
rs1041802	0.81[ASN][1000 genomes]
rs11088039	0.81[ASN][1000 genomes]
rs1155159	0.81[ASN][1000 genomes]
rs12152077	0.80[ASN][1000 genomes]
rs1367713	0.94[ASN][1000 genomes]
rs1367718	0.81[ASN][1000 genomes]
rs1367719	0.81[ASN][1000 genomes]
rs1431364	0.91[ASN][1000 genomes]
rs1475586	0.81[ASN][1000 genomes]
rs1557386	0.81[ASN][1000 genomes]
rs1560471	0.81[ASN][1000 genomes]
rs17646172	0.99[ASN][1000 genomes]
rs1835648	0.81[ASN][1000 genomes]
rs1835649	0.81[ASN][1000 genomes]
rs2017308	0.81[ASN][1000 genomes]
rs2831058	0.81[ASN][1000 genomes]
rs2831059	0.81[ASN][1000 genomes]
rs2831060	0.81[ASN][1000 genomes]
rs2831061	0.81[ASN][1000 genomes]
rs2831062	0.81[ASN][1000 genomes]
rs2831063	0.81[ASN][1000 genomes]
rs2831064	0.81[ASN][1000 genomes]
rs2831066	0.81[ASN][1000 genomes]
rs2831067	0.81[ASN][1000 genomes]
rs2831068	0.81[ASN][1000 genomes]
rs2831070	0.81[ASN][1000 genomes]
rs2831071	0.80[ASN][1000 genomes]
rs2831074	0.81[ASN][1000 genomes]
rs2831075	0.81[ASN][1000 genomes]
rs2831076	0.81[ASN][1000 genomes]
rs2831077	0.81[ASN][1000 genomes]
rs2831078	0.81[ASN][1000 genomes]
rs2831079	0.81[ASN][1000 genomes]
rs2831080	0.81[ASN][1000 genomes]
rs2831081	0.81[ASN][1000 genomes]
rs2831082	0.80[ASN][1000 genomes]
rs2831083	0.81[ASN][1000 genomes]
rs2831084	0.80[ASN][1000 genomes]
rs2831085	0.81[ASN][1000 genomes]
rs2831087	0.81[ASN][1000 genomes]
rs2831088	0.81[ASN][1000 genomes]
rs2831089	0.81[ASN][1000 genomes]
rs2831091	0.83[ASN][1000 genomes]
rs2831092	0.81[ASN][1000 genomes]
rs2831094	0.81[ASN][1000 genomes]
rs2831096	0.81[ASN][1000 genomes]
rs2831097	0.81[ASN][1000 genomes]
rs2831098	0.81[ASN][1000 genomes]
rs2831099	0.99[ASN][1000 genomes]
rs2831101	0.95[ASN][1000 genomes]
rs2831102	0.99[ASN][1000 genomes]
rs2831103	0.99[ASN][1000 genomes]
rs28394464	0.81[ASN][1000 genomes]
rs28470885	0.81[ASN][1000 genomes]
rs28576337	0.81[ASN][1000 genomes]
rs2898115	0.81[ASN][1000 genomes]
rs3902397	0.81[ASN][1000 genomes]
rs3906629	0.81[ASN][1000 genomes]
rs3910128	0.81[ASN][1000 genomes]
rs3910129	0.81[ASN][1000 genomes]
rs3910130	0.81[ASN][1000 genomes]
rs4113960	0.81[ASN][1000 genomes]
rs4113961	0.81[ASN][1000 genomes]
rs4438569	0.80[ASN][1000 genomes]
rs5005234	0.81[ASN][1000 genomes]
rs5005235	0.81[ASN][1000 genomes]
rs5005236	0.81[ASN][1000 genomes]
rs58131112	0.90[ASN][1000 genomes]
rs715241	0.81[ASN][1000 genomes]
rs715242	0.81[ASN][1000 genomes]
rs73183768	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73183769	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs914133	0.81[ASN][1000 genomes]
rs914134	0.81[ASN][1000 genomes]
rs9653692	0.81[ASN][1000 genomes]
rs9653693	0.81[ASN][1000 genomes]
rs9974135	0.80[ASN][1000 genomes]
rs9974297	0.81[ASN][1000 genomes]
rs9974860	0.80[ASN][1000 genomes]
rs9975519	0.81[ASN][1000 genomes]
rs9975804	0.81[ASN][1000 genomes]
rs9976066	0.81[ASN][1000 genomes]
rs9976248	0.81[ASN][1000 genomes]
rs9977323	0.81[ASN][1000 genomes]
rs9977452	0.81[ASN][1000 genomes]
rs9977509	0.81[ASN][1000 genomes]
rs9977527	0.82[ASN][1000 genomes]
rs9979154	0.81[ASN][1000 genomes]
rs9979321	0.81[ASN][1000 genomes]
rs9979569	0.81[ASN][1000 genomes]
rs9979777	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9979996	0.81[ASN][1000 genomes]
rs9981215	0.80[ASN][1000 genomes]
rs9981239	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9981772	0.81[ASN][1000 genomes]
rs9982537	0.81[ASN][1000 genomes]
rs9982546	0.81[ASN][1000 genomes]
rs9982677	0.81[ASN][1000 genomes]
rs9983211	0.81[ASN][1000 genomes]
rs9983340	0.81[ASN][1000 genomes]
rs9983418	0.81[ASN][1000 genomes]
rs9983492	0.81[ASN][1000 genomes]
rs9983636	0.81[ASN][1000 genomes]
rs9983784	0.81[ASN][1000 genomes]
rs9983804	0.81[ASN][1000 genomes]
rs9983943	0.81[ASN][1000 genomes]
rs9983947	0.81[ASN][1000 genomes]
rs9983950	0.81[ASN][1000 genomes]
rs9985086	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1059423	chr21:28957144-29306656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv913670	chr21:29022265-29525767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1059134	chr21:29061408-29188185	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29065800-29073600	Weak transcription	HSMMtube	muscle
2	chr21:29066200-29073600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr21:29067400-29076000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr21:29072400-29073800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:29072400-29073800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr21:29072400-29073800	Enhancers	HSMM	muscle
7	chr21:29072800-29073200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr21:29072800-29073200	Enhancers	NHDF-Ad	bronchial
9	chr21:29072800-29073400	Enhancers	Dnd41	blood
10	chr21:29072800-29073600	Enhancers	Osteobl	bone
11	chr21:29073000-29073200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr21:29073000-29073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr21:29073000-29074400	Enhancers	Fetal Lung	lung

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