Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10038598	0.84[CEU][hapmap]
rs10041421	0.84[CEU][hapmap]
rs1019925	0.84[CEU][hapmap]
rs1019926	0.84[CEU][hapmap]
rs1025473	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12518852	0.80[EUR][1000 genomes]
rs13169344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13181159	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1368341	0.80[EUR][1000 genomes]
rs1368343	0.80[EUR][1000 genomes]
rs1583286	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1897542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1972778	0.84[CEU][hapmap]
rs2400198	0.84[CEU][hapmap]
rs2400201	0.81[EUR][1000 genomes]
rs2436343	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs338885	0.91[CEU][hapmap]
rs338888	0.81[CEU][hapmap]
rs3903516	0.80[EUR][1000 genomes]
rs4521541	0.80[EUR][1000 genomes]
rs55824632	0.94[EUR][1000 genomes]
rs6580383	0.80[EUR][1000 genomes]
rs6580384	0.80[EUR][1000 genomes]
rs6867440	0.91[CEU][hapmap];0.84[YRI][hapmap]
rs6871842	0.90[CEU][hapmap]
rs6884968	0.80[EUR][1000 genomes]
rs6892276	0.81[CEU][hapmap]
rs6898331	0.81[EUR][1000 genomes]
rs919729	0.96[EUR][1000 genomes]
rs987806	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145101600-145117400	Weak transcription	Gastric	stomach
2	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
3	chr5:145107200-145123200	Weak transcription	Aorta	Aorta
4	chr5:145109400-145120600	Weak transcription	Left Ventricle	heart
5	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
6	chr5:145110400-145143800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:145111200-145123000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:145111400-145166800	Weak transcription	K562	blood
9	chr5:145113000-145117400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:145113600-145140000	Weak transcription	Ovary	ovary
11	chr5:145113800-145118800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:145114000-145117400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
14	chr5:145114200-145117800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:145114600-145142400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:145114800-145139200	Weak transcription	Fetal Intestine Large	intestine
17	chr5:145115200-145117000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:145115800-145143800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr5:145116400-145123200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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