Variant report

Variant	rs1368832
Chromosome Location	chr11:4932775-4932776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10500633	0.85[CHB][hapmap]
rs10768350	0.85[CHB][hapmap]
rs12417164	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16907093	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16907312	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs2570580	0.89[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap]
rs2595978	0.89[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs35645910	0.80[ASN][1000 genomes]
rs7118691	0.85[CHB][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap]
rs72858173	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941509	0.90[LWK][hapmap];0.93[YRI][hapmap]
rs7947547	0.85[CHB][hapmap]
rs7950564	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1368832	OR51G2	cis	parietal	SCAN
rs1368832	OR52A5	cis	parietal	SCAN
rs1368832	OR52A4	cis	parietal	SCAN
rs1368832	OR52B4	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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