Variant report

Variant	rs1369214
Chromosome Location	chr10:45900729-45900730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45898269..45903798-chr10:45904032..45907291,6	K562	blood:
2	chr10:45866237..45868097-chr10:45900340..45902647,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10793616	0.84[ASN][1000 genomes]
rs11239484	0.84[ASN][1000 genomes]
rs11239507	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12221233	0.83[EUR][1000 genomes]
rs1816492	0.84[ASN][1000 genomes]
rs1864415	0.84[ASN][1000 genomes]
rs2029253	0.81[EUR][1000 genomes]
rs2115819	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2310775	0.81[EUR][1000 genomes]
rs4948671	0.91[ASN][1000 genomes]
rs4948999	0.91[ASN][1000 genomes]
rs4949000	0.82[EUR][1000 genomes]
rs7076696	0.82[ASN][1000 genomes]
rs7099684	0.95[ASN][1000 genomes]
rs7477350	0.84[ASN][1000 genomes]
rs7894352	0.93[ASN][1000 genomes]
rs7909514	0.95[ASN][1000 genomes]
rs934187	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv3349621	chr10:45882995-45906254	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45871400-45904600	Weak transcription	Gastric	stomach
2	chr10:45884000-45907400	Weak transcription	Spleen	Spleen
3	chr10:45891600-45905200	Weak transcription	Pancreas	Pancrea
4	chr10:45891600-45907000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:45891600-45914200	Weak transcription	Thymus	Thymus
6	chr10:45892000-45907000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:45894400-45912800	Weak transcription	Placenta	Placenta
8	chr10:45897800-45900800	Genic enhancers	Primary B cells from cord blood	blood
9	chr10:45897800-45901600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:45898400-45901600	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:45898600-45901400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:45898600-45901600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:45899000-45901600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:45899200-45900800	Enhancers	Adipose Nuclei	Adipose
15	chr10:45899200-45900800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr10:45899400-45900800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:45899400-45914000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:45900000-45907000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
19	chr10:45900000-45913000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:45900200-45908600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr10:45900400-45901600	Enhancers	K562	blood
22	chr10:45900400-45903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links