Variant report

Variant	rs1369228
Chromosome Location	chr8:69621587-69621588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1369229	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16919108	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16934888	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17389034	1.00[YRI][hapmap]
rs6472416	1.00[ASN][1000 genomes]
rs7009976	1.00[ASN][1000 genomes]
rs7014810	1.00[ASN][1000 genomes]
rs763845	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7814208	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69611800-69622400	Weak transcription	Aorta	Aorta
2	chr8:69614200-69622400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:69614200-69622600	Weak transcription	Pancreas	Pancrea
4	chr8:69616600-69622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:69617200-69623200	Weak transcription	HSMM	muscle
6	chr8:69619600-69623000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:69621000-69621600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:69621400-69621800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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