Variant report

Variant	rs1369367
Chromosome Location	chr8:11140709-11140710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11057391..11059241-chr8:11140154..11142116,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171044	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1369366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435272	1.00[EUR][1000 genomes]
rs1435281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435283	1.00[EUR][1000 genomes]
rs1435284	1.00[EUR][1000 genomes]
rs1529855	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865516	1.00[EUR][1000 genomes]
rs1865520	1.00[EUR][1000 genomes]
rs2043509	1.00[EUR][1000 genomes]
rs2043511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2060464	1.00[AMR][1000 genomes]
rs2117614	0.83[AMR][1000 genomes]
rs2572368	1.00[EUR][1000 genomes]
rs2572373	1.00[EUR][1000 genomes]
rs2572396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2572402	1.00[AMR][1000 genomes]
rs2572424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2572425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2572427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2572453	1.00[EUR][1000 genomes]
rs2736257	1.00[AMR][1000 genomes]
rs2736259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2736260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2736263	1.00[AMR][1000 genomes]
rs2736271	1.00[AMR][1000 genomes]
rs2736275	1.00[EUR][1000 genomes]
rs2736276	1.00[EUR][1000 genomes]
rs2736279	1.00[EUR][1000 genomes]
rs2736281	1.00[EUR][1000 genomes]
rs2736284	1.00[EUR][1000 genomes]
rs2736383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55731352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61251909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73665041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73665047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs920046	1.00[EUR][1000 genomes]
rs920052	1.00[EUR][1000 genomes]
rs978148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv831233	chr8:11046854-11234384	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1033312	chr8:11126800-11252170	Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11135600-11141200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:11136000-11141000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:11137600-11141200	Weak transcription	Stomach Mucosa	stomach
4	chr8:11139200-11141000	Weak transcription	GM12878-XiMat	blood
5	chr8:11139600-11141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links