Variant report

Variant	rs1369901
Chromosome Location	chr12:29556702-29556703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29552214..29555113-chr12:29556374..29558432,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10161532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs10492378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs11050164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11050165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11050211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11050227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11050228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11050230	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12298758	1.00[CHB][hapmap]
rs12304563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12305868	1.00[AMR][1000 genomes]
rs12308214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12314430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314964	1.00[AMR][1000 genomes]
rs12315111	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12316548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12318046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12319953	0.81[AFR][1000 genomes]
rs12320036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12321184	1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs16934299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs34730070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3816113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs56331080	1.00[AMR][1000 genomes]
rs56753618	1.00[AMR][1000 genomes]
rs57061071	1.00[AMR][1000 genomes]
rs74081043	1.00[AMR][1000 genomes]
rs74081044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv557915	chr12:29556339-29559227	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29556400-29556800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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