Variant report

Variant	rs13702
Chromosome Location	chr8:19824492-19824493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10105606	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986942	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1372340	0.90[ASN][1000 genomes]
rs1372341	0.82[ASN][1000 genomes]
rs1372343	0.90[ASN][1000 genomes]
rs1372344	0.99[ASN][1000 genomes]
rs1441753	0.99[ASN][1000 genomes]
rs1441754	0.98[ASN][1000 genomes]
rs1441755	0.99[ASN][1000 genomes]
rs1441756	0.99[ASN][1000 genomes]
rs1441757	0.99[ASN][1000 genomes]
rs1441758	0.99[ASN][1000 genomes]
rs1441762	0.99[ASN][1000 genomes]
rs1441763	0.99[ASN][1000 genomes]
rs1441764	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441766	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs15285	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs1569213	0.88[ASN][1000 genomes]
rs17411031	0.99[ASN][1000 genomes]
rs17411045	0.99[ASN][1000 genomes]
rs17411126	0.99[ASN][1000 genomes]
rs17411133	0.99[ASN][1000 genomes]
rs17411168	0.99[ASN][1000 genomes]
rs17489268	0.99[ASN][1000 genomes]
rs17489282	0.99[ASN][1000 genomes]
rs17489373	0.99[ASN][1000 genomes]
rs17489539	0.89[ASN][1000 genomes]
rs1819092	0.86[ASN][1000 genomes]
rs1819094	0.82[ASN][1000 genomes]
rs1822200	0.99[ASN][1000 genomes]
rs1837842	0.99[ASN][1000 genomes]
rs1837843	0.99[ASN][1000 genomes]
rs1919484	0.98[ASN][1000 genomes]
rs1992442	0.99[ASN][1000 genomes]
rs1992443	0.99[ASN][1000 genomes]
rs2009493	0.99[ASN][1000 genomes]
rs2083636	0.99[ASN][1000 genomes]
rs2083637	0.99[ASN][1000 genomes]
rs2119689	0.99[ASN][1000 genomes]
rs2165558	0.91[ASN][1000 genomes]
rs2410618	0.99[ASN][1000 genomes]
rs2410619	0.99[ASN][1000 genomes]
rs2410620	0.97[ASN][1000 genomes]
rs2410621	0.97[ASN][1000 genomes]
rs2410623	0.99[ASN][1000 genomes]
rs2410625	0.99[ASN][1000 genomes]
rs2410627	0.91[ASN][1000 genomes]
rs2410628	0.89[ASN][1000 genomes]
rs2410629	0.91[ASN][1000 genomes]
rs2410630	0.88[ASN][1000 genomes]
rs287	0.93[ASN][1000 genomes]
rs289	0.93[ASN][1000 genomes]
rs2898495	0.91[ASN][1000 genomes]
rs291	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs295	0.80[CEU][hapmap];0.93[ASN][1000 genomes]
rs297	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs301	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs304	0.95[ASN][1000 genomes]
rs305	0.95[ASN][1000 genomes]
rs314	0.95[ASN][1000 genomes]
rs320	0.89[CEU][hapmap];0.95[ASN][1000 genomes]
rs3208305	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs322	0.95[ASN][1000 genomes]
rs326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs327	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs331	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34327087	0.99[ASN][1000 genomes]
rs34345068	0.99[ASN][1000 genomes]
rs34499461	0.98[ASN][1000 genomes]
rs34564316	0.99[ASN][1000 genomes]
rs34693282	0.90[ASN][1000 genomes]
rs34932218	0.99[ASN][1000 genomes]
rs34942551	0.98[ASN][1000 genomes]
rs35237252	0.96[ASN][1000 genomes]
rs35369244	0.98[ASN][1000 genomes]
rs35465966	0.90[ASN][1000 genomes]
rs35495249	0.99[ASN][1000 genomes]
rs35617716	0.96[ASN][1000 genomes]
rs35687633	0.99[ASN][1000 genomes]
rs35739466	0.98[ASN][1000 genomes]
rs3844510	0.99[ASN][1000 genomes]
rs3916027	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083261	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4126104	0.99[ASN][1000 genomes]
rs4320561	0.97[ASN][1000 genomes]
rs4333617	0.88[ASN][1000 genomes]
rs4335137	0.86[ASN][1000 genomes]
rs4375019	0.88[ASN][1000 genomes]
rs4406409	0.99[ASN][1000 genomes]
rs4425772	0.99[ASN][1000 genomes]
rs4593558	0.91[ASN][1000 genomes]
rs4628269	0.99[ASN][1000 genomes]
rs4644277	0.99[ASN][1000 genomes]
rs4922117	0.99[ASN][1000 genomes]
rs4922118	0.89[ASN][1000 genomes]
rs4922119	0.89[ASN][1000 genomes]
rs6586886	0.88[ASN][1000 genomes]
rs6986010	0.89[ASN][1000 genomes]
rs7013777	0.86[ASN][1000 genomes]
rs73208815	0.88[ASN][1000 genomes]
rs7461115	0.91[ASN][1000 genomes]
rs765547	0.99[ASN][1000 genomes]
rs765548	0.99[ASN][1000 genomes]
rs765549	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs894211	0.99[ASN][1000 genomes]
rs920588	0.99[ASN][1000 genomes]
rs920589	0.99[ASN][1000 genomes]
rs9644637	0.99[ASN][1000 genomes]
rs9644638	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515694	chr8:19821233-19824896	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
HDL Cholesterol - Triglycerides (HDLC-TG)	21386085	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13702	FAM160B2	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19805000-19824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:19805800-19824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:19811800-19826000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:19817000-19824800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:19820400-19825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:19820600-19824800	Strong transcription	Adipose Nuclei	Adipose
7	chr8:19820600-19824800	Weak transcription	Ovary	ovary
8	chr8:19820600-19825000	Weak transcription	Lung	lung
9	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
10	chr8:19821000-19826200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:19822200-19824800	Weak transcription	Right Ventricle	heart
12	chr8:19822800-19824800	Enhancers	Fetal Heart	heart
13	chr8:19823400-19825600	Enhancers	Fetal Lung	lung
14	chr8:19823400-19828200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:19824000-19825600	Weak transcription	Left Ventricle	heart

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