Variant report
| Variant | rs1370368 |
|---|---|
| Chromosome Location | chr2:209251334-209251335 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209244985..209246550-chr2:209250823..209252697,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10186040 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1030879 | 1.00[AMR][1000 genomes] |
| rs12624141 | 1.00[AMR][1000 genomes] |
| rs1437417 | 1.00[YRI][hapmap] |
| rs2028144 | 1.00[AMR][1000 genomes] |
| rs2885827 | 1.00[AFR][1000 genomes] |
| rs4673400 | 1.00[AMR][1000 genomes] |
| rs4675759 | 1.00[AMR][1000 genomes] |
| rs6435439 | 1.00[AMR][1000 genomes] |
| rs6435447 | 1.00[AMR][1000 genomes] |
| rs6710221 | 1.00[AMR][1000 genomes] |
| rs6728314 | 1.00[AMR][1000 genomes] |
| rs6744236 | 1.00[AMR][1000 genomes] |
| rs6744738 | 0.90[AFR][1000 genomes] |
| rs7596571 | 1.00[AMR][1000 genomes] |
| rs7604977 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs995426 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534496 | chr2:208814372-209302791 | Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv584297 | chr2:209020181-209316760 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv962520 | chr2:209245277-209253106 | Weak transcription Bivalent/Poised TSS Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209251200-209251600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
