Variant report

Variant	rs1370422
Chromosome Location	chr3:159355293-159355294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159351342..159356372-chr3:159480280..159483892,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1387693	1.00[CEU][hapmap]
rs7616179	1.00[CEU][hapmap]
rs981145	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159350600-159358200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:159353000-159358000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:159353200-159355600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:159353200-159355600	Weak transcription	NHEK	skin
5	chr3:159353200-159355800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:159353200-159356000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:159353200-159356200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:159353200-159358000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:159353200-159358000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:159353200-159358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:159353200-159358200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:159353400-159355800	Weak transcription	HMEC	breast
13	chr3:159354800-159356200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:159354800-159356400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:159354800-159356400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:159354800-159356400	Enhancers	NHDF-Ad	bronchial
17	chr3:159355000-159356200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:159355000-159356200	Enhancers	HSMMtube	muscle
19	chr3:159355000-159356400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:159355000-159356400	Enhancers	Osteobl	bone
21	chr3:159355200-159355400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:159355200-159356000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:159355200-159356400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:159355200-159356400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:159355200-159356400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:159355200-159356400	Flanking Active TSS	A549	lung
27	chr3:159355200-159356400	Enhancers	Hela-S3	cervix
28	chr3:159355200-159356400	Enhancers	HSMM	muscle
29	chr3:159355200-159356400	Enhancers	NH-A	brain
30	chr3:159355200-159356400	Enhancers	NHLF	lung

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