Variant report

Variant	rs1375195
Chromosome Location	chr2:33929456-33929457
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1375196	0.80[ASW][hapmap];0.89[CEU][hapmap];0.90[GIH][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1448555	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs34148113	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35432001	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7355402	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33928800-33929600	Enhancers	HUVEC	blood vessel
2	chr2:33928800-33930400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:33929000-33930400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:33929000-33931800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:33929200-33930000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:33929200-33930200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:33929200-33930200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr2:33929200-33930200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:33929200-33930200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:33929200-33930200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:33929200-33930400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:33929200-33930600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:33929400-33929600	Enhancers	Right Ventricle	heart
14	chr2:33929400-33930000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:33929400-33930000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:33929400-33930200	Enhancers	Brain Germinal Matrix	brain
17	chr2:33929400-33930400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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