Variant report

Variant	rs1376965
Chromosome Location	chr3:83484060-83484061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10440072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13061073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1376964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs349150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35518206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4407413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4856233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842605	1.00[AMR][1000 genomes]
rs73842607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998408	chr3:83057096-83549271	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536609	chr3:83057096-83549271	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877071	chr3:83324183-83536528	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1002964	chr3:83478168-83516136	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3334214	chr3:83481887-83484260	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3440288	chr3:83481887-83484435	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83480000-83484600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:83483200-83485000	Enhancers	Dnd41	blood
3	chr3:83483600-83484800	Enhancers	Fetal Brain Female	brain
4	chr3:83483600-83485000	Enhancers	Fetal Brain Male	brain
5	chr3:83483800-83485200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:83484000-83484200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:83484000-83484200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:83484000-83484200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:83484000-83484600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:83484000-83484800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links