Variant report

Variant	rs1377230
Chromosome Location	chr8:114664716-114664717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10088331	0.83[ASN][1000 genomes]
rs10088339	0.86[ASN][1000 genomes]
rs10097118	0.83[ASN][1000 genomes]
rs10105039	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10105221	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10110242	0.93[ASN][1000 genomes]
rs10113088	0.86[ASN][1000 genomes]
rs10505206	0.87[ASN][1000 genomes]
rs10955672	0.85[ASN][1000 genomes]
rs12386865	0.86[ASN][1000 genomes]
rs12386964	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12542164	0.93[ASN][1000 genomes]
rs12677871	0.85[ASN][1000 genomes]
rs12681503	0.85[ASN][1000 genomes]
rs13439326	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1348382	0.83[ASN][1000 genomes]
rs1597862	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16884823	0.82[AMR][1000 genomes]
rs16884960	0.82[ASN][1000 genomes]
rs28405460	0.91[ASN][1000 genomes]
rs28477627	0.85[ASN][1000 genomes]
rs28579378	0.86[ASN][1000 genomes]
rs28825376	0.85[ASN][1000 genomes]
rs4384009	0.83[ASN][1000 genomes]
rs4492406	0.83[ASN][1000 genomes]
rs60561026	0.91[ASN][1000 genomes]
rs62522065	0.85[ASN][1000 genomes]
rs7010793	0.83[ASN][1000 genomes]
rs734622	0.86[ASN][1000 genomes]
rs7461949	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826236	0.86[ASN][1000 genomes]
rs7826446	0.86[ASN][1000 genomes]
rs7833423	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891332	chr8:114532488-114667112	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891334	chr8:114564791-114671631	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv818650	chr8:114574863-115477600	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2758168	chr8:114575703-115321957	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2759636	chr8:114575703-115321957	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv891335	chr8:114589007-114725064	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114664400-114665600	Enhancers	Primary B cells from cord blood	blood

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