Variant report

Variant	rs1378796
Chromosome Location	chr3:157131788-157131789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13095865	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13099226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34618451	0.82[EUR][1000 genomes]
rs35193163	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35826850	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66698722	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67121580	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157120200-157135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:157123000-157135000	Weak transcription	Spleen	Spleen
6	chr3:157124400-157134200	Weak transcription	HSMM	muscle
7	chr3:157124400-157135800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:157124600-157134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:157126600-157135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:157127400-157134200	Weak transcription	NHLF	lung
12	chr3:157128200-157138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:157129000-157131800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:157129000-157135000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:157129200-157131800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157129400-157131800	Strong transcription	HUVEC	blood vessel
17	chr3:157130000-157135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:157130000-157135000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157130600-157134200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:157130800-157135000	Weak transcription	HSMMtube	muscle
21	chr3:157131600-157134800	Weak transcription	Osteobl	bone
22	chr3:157131600-157135000	Weak transcription	NH-A	brain

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