Variant report

Variant	rs137896118
Chromosome Location	chr6:109625239-109625240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:109625062-109626138	K562	blood:	n/a	n/a
2	MYC	chr6:109624828-109626301	K562	blood:	n/a	n/a
3	HMGN3	chr6:109625169-109626147	K562	blood:	n/a	n/a
4	SIN3AK20	chr6:109624913-109625817	MCF-7	breast:	n/a	n/a
5	MAFF	chr6:109625204-109626105	K562	blood:	n/a	n/a
6	EP300	chr6:109624869-109626613	K562	blood:	n/a	chr6:109624963-109624973
7	MAX	chr6:109625023-109625363	K562	blood:	n/a	n/a
8	GATA3	chr6:109625073-109625510	T-47D	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
9	MYC	chr6:109624868-109626229	K562	blood:	n/a	n/a
10	PML	chr6:109625114-109626211	K562	blood:	n/a	n/a
11	JUND	chr6:109624960-109626258	K562	blood:	n/a	n/a
12	MYC	chr6:109625229-109625258	K562	blood:	n/a	n/a
13	GATA2	chr6:109625161-109626144	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
14	GATA3	chr6:109624872-109625799	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
15	MYC	chr6:109624986-109626259	K562	blood:	n/a	n/a
16	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
17	GATA3	chr6:109625182-109625721	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
18	MAFK	chr6:109625233-109626082	K562	blood:	n/a	n/a
19	CHD2	chr6:109625065-109626025	K562	blood:	n/a	n/a
20	RCOR1	chr6:109624924-109626269	K562	blood:	n/a	n/a
21	JUN	chr6:109625148-109626221	K562	blood:	n/a	n/a
22	TAL1	chr6:109625149-109626289	K562	blood:	n/a	n/a
23	BHLHE40	chr6:109625057-109626198	K562	blood:	n/a	n/a
24	ZNF274	chr6:109625202-109626061	K562	blood:	n/a	n/a
25	GATA2	chr6:109625142-109626131	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
26	CCNT2	chr6:109624959-109626164	K562	blood:	n/a	n/a
27	POLR2A	chr6:109625029-109626263	K562	blood:	n/a	n/a
28	HCFC1	chr6:109624970-109626203	K562	blood:	n/a	n/a
29	IRF1	chr6:109625214-109626088	K562	blood:	n/a	chr6:109625779-109625800
30	MAZ	chr6:109624869-109626317	K562	blood:	n/a	n/a
31	TEAD4	chr6:109624855-109626276	K562	blood:	n/a	n/a
32	TEAD4	chr6:109624744-109626315	K562	blood:	n/a	n/a
33	TBP	chr6:109625031-109626072	K562	blood:	n/a	n/a
34	ZMIZ1	chr6:109624996-109626130	K562	blood:	n/a	n/a
35	GATA1	chr6:109625168-109626204	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
36	CBX3	chr6:109624641-109626455	K562	blood:	n/a	n/a
37	TBL1XR1	chr6:109624960-109626155	K562	blood:	n/a	n/a
38	STAT1	chr6:109625211-109626090	K562	blood:	n/a	n/a
39	NR2F2	chr6:109624855-109626397	K562	blood:	n/a	n/a
40	MYC	chr6:109624972-109626186	K562	blood:	n/a	n/a
41	ATF1	chr6:109625016-109626254	K562	blood:	n/a	n/a
42	JUN	chr6:109625018-109626109	K562	blood:	n/a	n/a
43	ARID3A	chr6:109625011-109626078	K562	blood:	n/a	n/a
44	MAX	chr6:109624918-109626176	K562	blood:	n/a	n/a
45	GATA1	chr6:109624821-109626516	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
46	TBL1XR1	chr6:109624864-109626236	K562	blood:	n/a	n/a
47	GATA2	chr6:109625037-109626235	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
48	GATA3	chr6:109625058-109625682	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
49	IRF1	chr6:109625111-109626126	K562	blood:	n/a	chr6:109625779-109625800
50	UBTF	chr6:109624933-109626221	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109623746..109625263-chr6:109628123..109630735,2	K562	blood:
4	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
5	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

Variant related genes	Relation type
ENSG00000201023	TF binding region
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:109619400-109629200	Weak transcription	Gastric	stomach
4	chr6:109619400-109638000	Weak transcription	HepG2	liver
5	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:109619600-109625600	Weak transcription	Lung	lung
7	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
10	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:109622400-109626200	Enhancers	Placenta	Placenta
13	chr6:109623000-109625400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:109623000-109625600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:109623200-109625400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:109623200-109625800	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:109623400-109625400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:109623600-109625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:109624400-109626000	Enhancers	Hela-S3	cervix
22	chr6:109624400-109626400	Flanking Active TSS	K562	blood
23	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:109624600-109625600	Enhancers	Aorta	Aorta
25	chr6:109624600-109626200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:109624600-109626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:109624600-109626400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:109624600-109626400	Enhancers	Pancreas	Pancrea
29	chr6:109624600-109626600	Enhancers	Fetal Intestine Large	intestine
30	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
31	chr6:109624800-109625400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr6:109624800-109625800	Enhancers	Fetal Muscle Leg	muscle
33	chr6:109624800-109626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:109624800-109626200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:109624800-109626400	Enhancers	Stomach Mucosa	stomach
36	chr6:109624800-109627400	Enhancers	Primary B cells from peripheral blood	blood
37	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
38	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:109625000-109625400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:109625000-109625600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:109625000-109625800	Enhancers	Small Intestine	intestine
42	chr6:109625000-109625800	Enhancers	NHDF-Ad	bronchial
43	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:109625000-109626200	Enhancers	Left Ventricle	heart
46	chr6:109625000-109626200	Enhancers	Right Ventricle	heart
47	chr6:109625000-109626400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr6:109625000-109627000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:109625000-109627000	Enhancers	Brain Substantia Nigra	brain
50	chr6:109625000-109627000	Enhancers	Skeletal Muscle Female	skeletal muscle

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