Variant report

Variant	rs137899210
Chromosome Location	chr15:41856962-41856963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41856390-41857223	PFSK-1	brain:	n/a	n/a
2	FOXP2	chr15:41856640-41856982	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr15:41856229-41857524	K562	blood:	n/a	n/a
4	TEAD4	chr15:41856497-41856979	K562	blood:	n/a	n/a
5	FOXP2	chr15:41856641-41856971	PFSK-1	brain:	n/a	n/a
6	REST	chr15:41856176-41857362	H1-neurons	neurons:	n/a	chr15:41856892-41856905 chr15:41857166-41857184 chr15:41856895-41856908
7	RCOR1	chr15:41856515-41857065	K562	blood:	n/a	n/a
8	MAX	chr15:41856631-41857013	K562	blood:	n/a	n/a
9	POLR2A	chr15:41856018-41856995	K562	blood:	n/a	n/a
10	ZNF263	chr15:41856255-41857053	HEK293-T-REx	kidney:	n/a	chr15:41856483-41856492
11	POLR2A	chr15:41856706-41857290	HepG2	liver:	n/a	n/a
12	CTCF	chr15:41856840-41856990	HepG2	liver:	n/a	n/a
13	POLR2A	chr15:41856429-41857237	H1-hESC	embryonic stem cell:	n/a	n/a
14	CBX3	chr15:41856619-41857025	K562	blood:	n/a	n/a
15	TEAD4	chr15:41856383-41856983	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr15:41856414-41857086	H1-neurons	neurons:	n/a	n/a
17	SP1	chr15:41856573-41857031	H1-hESC	embryonic stem cell:	n/a	chr15:41856720-41856731 chr15:41856793-41856802 chr15:41856851-41856865 chr15:41856708-41856719 chr15:41856789-41856803
18	MAZ	chr15:41856513-41857022	K562	blood:	n/a	n/a
19	POLR2A	chr15:41855023-41857639	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr15:41856338-41857405	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr15:41856102-41857580	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr15:41856154-41856968	K562	blood:	n/a	n/a
23	MAZ	chr15:41856380-41857080	IMR90	lung:	n/a	n/a
24	POLR2A	chr15:41856741-41856980	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr15:41856390-41857107	K562	blood:	n/a	n/a
26	CTCF	chr15:41856880-41857030	BE2_C	brain:	n/a	n/a
27	REST	chr15:41856310-41856976	PFSK-1	brain:	n/a	chr15:41856892-41856905 chr15:41856895-41856908
28	SP1	chr15:41856299-41857097	H1-hESC	embryonic stem cell:	n/a	chr15:41856720-41856731 chr15:41856481-41856495 chr15:41856793-41856802 chr15:41856851-41856865 chr15:41856708-41856719 chr15:41856789-41856803

No.	Distal block	Cell Line	Cell type
1	chr15:41856836..41858542-chr15:41952173..41953837,2	K562	blood:
2	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
3	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000174197	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359172	chr15:41856320-41857334	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41859600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41852400-41860600	Weak transcription	HUVEC	blood vessel
4	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:41852600-41858600	Weak transcription	NHDF-Ad	bronchial
6	chr15:41852600-41859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:41852600-41877400	Weak transcription	HMEC	breast
8	chr15:41852800-41857600	Genic enhancers	Fetal Stomach	stomach
9	chr15:41852800-41877400	Weak transcription	NHEK	skin
10	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
11	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
12	chr15:41853200-41858200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:41853200-41860200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
17	chr15:41853400-41857400	Enhancers	Ovary	ovary
18	chr15:41853400-41859400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
19	chr15:41853400-41859800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
21	chr15:41853600-41857200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:41853600-41857600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
23	chr15:41853600-41859800	Genic enhancers	H1 Cell Line	embryonic stem cell
24	chr15:41853600-41860000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
28	chr15:41854000-41860200	Strong transcription	Dnd41	blood
29	chr15:41854000-41860800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:41854200-41857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:41854200-41859600	Weak transcription	Pancreas	Pancrea
33	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
34	chr15:41854400-41857000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:41854400-41857600	Strong transcription	Fetal Brain Female	brain
36	chr15:41854600-41857200	Enhancers	Fetal Thymus	thymus
37	chr15:41854800-41857000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:41854800-41857400	Genic enhancers	Fetal Muscle Leg	muscle
39	chr15:41855000-41857400	Genic enhancers	Fetal Lung	lung
40	chr15:41855000-41858200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
42	chr15:41855200-41857400	Enhancers	Spleen	Spleen
43	chr15:41855200-41858000	Enhancers	Fetal Kidney	kidney
44	chr15:41855200-41858000	Weak transcription	A549	lung
45	chr15:41855200-41860000	Weak transcription	Gastric	stomach
46	chr15:41855400-41857400	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:41855400-41857400	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr15:41855400-41857600	Enhancers	Placenta	Placenta
49	chr15:41855400-41860200	Weak transcription	Esophagus	oesophagus
50	chr15:41855400-41862000	Weak transcription	NHLF	lung

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