Variant report

Variant	rs137900113
Chromosome Location	chr2:47468789-47468790
allele	-/GTTATTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:47465412..47469681-chr2:47474773..47478680,4	MCF-7	breast:
2	chr2:47462369..47466702-chr2:47468560..47470875,4	K562	blood:
3	chr2:47402721..47404828-chr2:47466923..47470052,3	MCF-7	breast:
4	chr2:47467180..47468819-chr2:47490590..47493226,2	MCF-7	breast:
5	chr2:47399058..47406701-chr2:47458639..47471254,30	K562	blood:
6	chr2:47468738..47470603-chr2:47472163..47473920,2	K562	blood:
7	chr2:47467890..47470603-chr2:47472070..47473663,2	K562	blood:
8	chr2:47461484..47463869-chr2:47468560..47470717,2	K562	blood:
9	chr2:47399687..47407797-chr2:47461699..47469642,25	K562	blood:
10	chr2:47464125..47466702-chr2:47468051..47470081,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143933	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	esv10649	chr2:47429316-47472670	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv457385	chr2:47468331-47552277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv581755	chr2:47468331-47552277	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2141179	chr2:47468789-47468797	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47464200-47468800	Weak transcription	Right Atrium	heart
2	chr2:47466200-47468800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:47466400-47468800	Weak transcription	Ovary	ovary
4	chr2:47466400-47470800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:47466800-47469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:47466800-47470800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:47467000-47468800	Weak transcription	K562	blood
8	chr2:47467000-47469600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:47467000-47470800	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:47467000-47471000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:47467000-47476400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:47467200-47468800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:47467200-47469000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:47467200-47470600	Weak transcription	Fetal Stomach	stomach
15	chr2:47467200-47471000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:47467200-47476200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:47467400-47469000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:47467400-47471000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:47467400-47476000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:47467400-47476200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:47468600-47469800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links