Variant report

Variant	rs137979352
Chromosome Location	chr9:24037832-24037833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892794	chr9:23811903-24052569	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831526	chr9:23867998-24042423	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027636	chr9:23927055-24048926	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv613828	chr9:23929313-24049507	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3378420	chr9:24010617-24371943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv831527	chr9:24036609-24204882	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24035200-24038200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:24035800-24038000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:24036600-24038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:24036800-24038200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:24037200-24038000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:24037200-24038200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:24037800-24039000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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