Variant report

Variant	rs137987904
Chromosome Location	chr1:214705440-214705441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:214705274-214705474	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
KRT18P12	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945285	chr1:214705327-214707354	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
3	chr1:214690600-214705600	Weak transcription	Ovary	ovary
4	chr1:214690600-214705600	Weak transcription	Pancreas	Pancrea
5	chr1:214691400-214705600	Weak transcription	Placenta	Placenta
6	chr1:214692400-214710600	Weak transcription	HUVEC	blood vessel
7	chr1:214694400-214706400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:214697800-214706000	Weak transcription	Lung	lung
9	chr1:214698800-214710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:214699200-214705600	Weak transcription	Gastric	stomach
11	chr1:214699200-214706200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:214699200-214706200	Weak transcription	Esophagus	oesophagus
13	chr1:214699200-214711400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:214699200-214711600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:214699400-214706000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
19	chr1:214700000-214706000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:214700800-214706400	Weak transcription	Left Ventricle	heart
21	chr1:214700800-214711400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:214701200-214705600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:214701200-214710400	Weak transcription	Adipose Nuclei	Adipose
24	chr1:214701200-214710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:214701200-214710800	Weak transcription	NH-A	brain
26	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
27	chr1:214701400-214710600	Weak transcription	NHDF-Ad	bronchial
28	chr1:214701600-214710400	Weak transcription	A549	lung
29	chr1:214702200-214706800	Weak transcription	Fetal Intestine Large	intestine
30	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
31	chr1:214703000-214710600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:214703000-214711600	Weak transcription	Psoas Muscle	Psoas
33	chr1:214703600-214706600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:214703600-214710400	Weak transcription	Small Intestine	intestine
35	chr1:214703800-214706000	Enhancers	Fetal Brain Male	brain
36	chr1:214703800-214711800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:214704000-214706000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:214704000-214707000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:214704200-214711600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:214704600-214705600	Enhancers	Colon Smooth Muscle	Colon
41	chr1:214704600-214705600	Enhancers	Fetal Kidney	kidney
42	chr1:214704600-214705800	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr1:214704600-214705800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:214704600-214706800	Strong transcription	HSMM	muscle
45	chr1:214704800-214705800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr1:214704800-214705800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:214704800-214705800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:214704800-214706600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr1:214704800-214706800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:214704800-214706800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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