Variant report

Variant	rs138009600
Chromosome Location	chr3:141683013-141683014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3351652	chr3:141682799-141684772	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:141666400-141687200	Strong transcription	Dnd41	blood
6	chr3:141667000-141685600	Weak transcription	Brain Substantia Nigra	brain
7	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:141670000-141683600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:141670000-141684000	Weak transcription	Colonic Mucosa	Colon
12	chr3:141671600-141697400	Weak transcription	Gastric	stomach
13	chr3:141671800-141686400	Weak transcription	HepG2	liver
14	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
15	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
16	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
17	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
18	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
20	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:141674400-141688000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:141674600-141700400	Weak transcription	Esophagus	oesophagus
25	chr3:141674600-141712600	Weak transcription	Fetal Brain Male	brain
26	chr3:141675200-141684800	Strong transcription	Fetal Intestine Small	intestine
27	chr3:141675400-141683800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr3:141675400-141684800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr3:141675400-141687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:141675400-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:141675600-141683800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr3:141675600-141687200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:141675600-141687200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:141675600-141687200	Strong transcription	Thymus	Thymus
35	chr3:141675800-141683800	Strong transcription	Fetal Intestine Large	intestine
36	chr3:141675800-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:141676000-141683200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:141676000-141683400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:141676000-141687000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:141676000-141687000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:141676000-141687000	Strong transcription	Fetal Thymus	thymus
42	chr3:141676200-141703800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:141676800-141684200	Weak transcription	Fetal Heart	heart
44	chr3:141676800-141688400	Weak transcription	Fetal Kidney	kidney
45	chr3:141677400-141696200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:141677800-141691200	Weak transcription	Brain Anterior Caudate	brain
47	chr3:141677800-141739000	Weak transcription	Left Ventricle	heart
48	chr3:141678200-141688600	Weak transcription	Primary B cells from cord blood	blood
49	chr3:141678600-141688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:141678800-141745600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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