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Variant report
Variant
rs138015431
Chromosome Location
chr4:128000538-128000539
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:7)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr4:128000473-128000732
A549
lung:
n/a
chr4:128000568-128000577
chr4:128000568-128000577
chr4:128000487-128000500
chr4:128000566-128000577
chr4:128000568-128000579
chr4:128000568-128000577
chr4:128000568-128000577
2
REST
chr4:128000509-128000892
PFSK-1
brain:
n/a
chr4:128000746-128000755
3
CEBPB
chr4:128000397-128000737
K562
blood:
n/a
chr4:128000568-128000577
chr4:128000568-128000577
chr4:128000487-128000500
chr4:128000566-128000577
chr4:128000568-128000579
chr4:128000568-128000577
chr4:128000568-128000577
4
CEBPB
chr4:128000438-128000707
ECC-1
luminal epithelium:
n/a
chr4:128000568-128000577
chr4:128000568-128000577
chr4:128000487-128000500
chr4:128000566-128000577
chr4:128000568-128000579
chr4:128000568-128000577
chr4:128000568-128000577
5
CEBPB
chr4:128000425-128000755
HepG2
liver:
n/a
chr4:128000568-128000577
chr4:128000568-128000577
chr4:128000487-128000500
chr4:128000566-128000577
chr4:128000568-128000579
chr4:128000568-128000577
chr4:128000568-128000577
6
SMC3
chr4:128000520-128000643
HepG2
liver:
n/a
n/a
7
CEBPB
chr4:128000426-128000753
IMR90
lung:
n/a
chr4:128000568-128000577
chr4:128000568-128000577
chr4:128000487-128000500
chr4:128000566-128000577
chr4:128000568-128000579
chr4:128000568-128000577
chr4:128000568-128000577
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000250945
TF binding region
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3353295
chr4:127994396-128017617
Enhancers Weak transcription ZNF genes & repeats
TF binding regionlncRNA
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links